PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1090851g006
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family E2F/DP
Protein Properties Length: 170aa    MW: 19283.9 Da    PI: 5.8677
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1090851g006genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP512.4e-163582971
             E2F_TDP 29 evakeLvse..............dvknkrRRiYDilNVLealnliekkekneirwkg 71
                        +va+e+++e              ++kn+rRR+YD++NVL+a++ i k +k+eirw g
  PDK_30s1090851g006  3 QVADEIIAElaplqksassyvqfEEKNIRRRVYDAFNVLMAIDAIVK-DKKEIRWVG 58
                        6999999999999999999999999**********************.*******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.2E-21361IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.6E-5458IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.58E-11459IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.3E-12658IPR003316E2F/DP family, winged-helix DNA-binding domain
SMARTSM011383.9E-765155IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440745.75E-1766156No hitNo description
PfamPF087812.0E-11103163IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MVQVADEIIA ELAPLQKSAS SYVQFEEKNI RRRVYDAFNV LMAIDAIVKD KKEIRWVGWS  60
CTKSAELKRV KEVHMNLMNS IQRKARFLKE LEDQANYGKD MDQTSPKATV EIEISEDQQF  120
VKFDFNGTPF NSHDGAAILK EMRCSRALET ENATRGSMDG SNSIADLSGK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008793118.11e-111PREDICTED: transcription factor-like protein DPA isoform X4
SwissprotQ9FNY31e-36DPA_ARATH; Transcription factor-like protein DPA
TrEMBLM0SF631e-45M0SF63_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P16470_0013e-45(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02470.37e-38Transcription factor DP